CASE Obtain Credible Sets — get_credible

Obtain credible sets for any multi-trait fine-mapping results.

get_credible_sets(
  pips,
  R,
  verbose = TRUE,
  cor.min = 0.5,
  coverage_thres = 0.95,
  ruled_out = 1e-04
)

Arguments

pips: (M * C),The pips of SNPs.
R: M * M matrix of LD.
verbose: (optional) logical, whether to print logging information. Default = TRUE.
cor.min: minimum correlation in the credible sets
coverage_thres: threshold for the sum of PIPs.
ruled_out: excluding SNPs with PIPs less than the threshold.

a length C list of credible sets.